Quantum Life Science

Natural Mathematics

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For the harmony of the world is made manifest
in Form and Number,
and the heart and soul and all the poetry
of Natural Philosophy
are embodied in the concept of mathematical beauty.


D'Arcy Thompson
 

'The recognition of structured chaos
has been hailed as a third revolution,
worthy to
be set alongside the Newtonian
and quantum mechanical revolutions

which preceded it.'

John Polkinghorne, 'Reason and Reality' , SPCK 1991

A science-wide revolution?

Nearly twenty years separate Polkinghorne's statement of revolution and the Royal Society acknowledgement of a 'radical paradigm shift' and the juxtaposition of these statements serves, in Kuhnian principle, to illustrate both extremes of the process of scientific revolution:  from early support by a few significant workers in the field, to institutional statement, i.e., changing the textbooks. 

These are indications of revolution, but yet question remains as to what is really driving this paradigm shift.  'Revolution' is a common call within disciplines, but by its very name we know it is spin-out of something other driving forward, it is effect and not cause, indeed, revolution is a phase, neither a beginning or an end, just a period of turbulence. 

The Royal Society statement of the case is effectively confirmation that after only two generations of development a chaotic reality is accepted by science and it is now only a matter of coming to terms.


FRACTAL GEOMETRY AND CHAOS THEORY

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One version of the now iconic Mandelbrot Set - only realised by the power of computing ...

Don't mention the Emperor's new clothes ...

The revolution that dare not speak its name ...?

One has to wonder at why this truly astonishing turn of events has been able to come about with no significant notice being given.  Whilst Benoit Mandelbrot has received a well-deserved share of prizes, there is a strange reluctance in some scientific and, particularly, mathematic, communities to acknowledge the immensity of what he has achieved, either by playing down his role as just developing the legacy of others or by playing down the profundity of fractal geometry itself.  This is a truly immense misjudgement by those who dismiss fractal working as trivial or so widespread as to have lost all meaning or significance, but then fail to recognise that 'widespread' = universal - quite literally universal, in this context.  It is the geometry of our cosmos.

Nobody, it seems, is willing to risk their Professorial pension by declaring the Emperor's new clothes to indeed be in place, of exquisite and fine self-organised manufacture and possessed of a greater and more subtle beauty than almost any human mind could conceive.  The 'Golem' of classical biology is today made light, or rather is informed and animated by the transformation of light that underpins the working system that makes man.  Man's material form is made by the working of light and holography renders form from light.  I am camera, cinema and film?
 
And then there is nature, fabulous, 100-dimensional (at minimum), nature, the task of understanding whose capabilities we cannot yet begin to fathom, though science has a made a helpful start. 

Much has been made of Wigner’s historic observation on ‘the unreasonable effectiveness of mathematics’, but the statement today appears inadequate in light of the extraordinary transformation of vision that has been wrought in science by the inception of fractal geometry and chaos theory (FGCT) and which seems to have given us a truly 'reasonable’, i.e., natural, mathematic. 

It has to be a matter of intuition, of course, as proof is a matter of time, but it would seem that in the complex combine of fractal geometry and chaos theory we are possessed of what might be called 'The Mathematical Principles of Natural Philosophy' (to borrow the Newtonian title) or 'nature's own geometry'.  This is the Philosopher's or the Ionian Dream, most importantly, Descartes' Dream, to be possessed of the mathematical key by which we might understand the created universe.  This is the dream that has driven the development of science itself, as well as mathematics, underpins the emergence of our 'Enlightenment' science and has been the philosophic position of centuries of thinkers through from the Babylonians and Greeks, to Descartes and Einstein.  (See pretty much any book by John D Barrow). 
 
Mandelbrot did, after all, go out and ‘measure the world’, definitively in search of nature’s own geometry, yet much of science seems surprised by, or disbelieving of, the possibility that he might just have done such an incredible thing - including Mandelbrot himself. 

Despite the force of intuition that informs the many who have come to share the dream and find it somehow realised in FGCT, 
there are still today mathematicians and scientists who have not recognised what it is they in fact have - or are perhaps too modest to try and claim it. 

Some have disregarded it believing it to be a fad or passing fashion.  Fashions come and go and the careful academic is reluctant to hope too much of any particular schema given the propensity for current truths to fall in the light of later findings.  Moreover there is considerable pressure on the working academic to produce results and stay at the top of their field which, once the fashion is in swing, can only be done by effectively surfing every new fashion, no matter that these requirements distract from focussed attention on and development of potentially more valuable work.

An excellent example of this type of fashion driven thinking is given by Philip Ball in his recent series of books on Flow, Shapes and Branches and he effectively gives verbatim report of just such thinking in operation, saying he:

'can think of no better illustration than fractals of the fact that science, like any other human activity, is prey to fashion' ... 'In scientific research, where once it was a matter of interest merely to identify a new fractal structure, this now elicits a weary shrug of the shoulders, for scientists have grown accustomed to the notion that they are ubiquitous.'  One has to wonder why ubiquity speaks so little to so many scientists?  Surely that very ubiquity, that universal expression, is something that indicates something truly profound and fundamental?  He goes on to report the failure of the mathematical community to make the connection between the fractals and number theory. 

'Some mathematicians sniffily dismissed the fad for fractals as a kind of fancy computer-graphic doodling, nothing to do with their precise and intricate art of numbers.'  (Ball, 2009).
  

One has to suspect that part of the reason for this perception is the developmental history of the mathematic which, after the initial introduction of the coincident conceptions of Fractal Geometry as the metric and the Feigenbaum, the dynamic signature of chaos, as its iconic signifier in 1974, was followed in 1980 by the advent of the Mandelbrot Set – ‘the most extraordinary discovery in the history of mathematics'  (A C Clarke, 1989), but ever since has necessarily been wrapped up in self-examination and seemingly unbiquitous application - application so wide, indeed, as to extend from quantum to cosmos - that even the mathematicians have become 'bored' with fractality.  At base, you have to think, it is just a failure of imagination.

Double Nobel laureate, Ilya Prigogine, at a Holloway College seminar in 1995, made perfectly explicit the transition of vision he had undergone in applying the new mathematic when he spoke of it delivering a perspective he had never before imagined and how the mathematic itself indicated the natural direction for future work.  At that time he was making notes for his next book that, he explained, would be a ‘more philosophical tract than usual’ and which he had provisionally titled as The New Enlightenment(His announcement was, for this author, music to the ears as a clearly visible envelope sticking out of his bag by the dias as he spoke contained an outline of the thinking illustrated herein, with suggestion as to that same title for the work!?)

On stage with Prigogine was John Polkinghorne, a mathematical physicist, who had earlier proposed:
 
‘The recognition of structured chaos has been hailed as a "third revolution", worthy to be set alongside the Newtonian and quantum mechanical revolutions which preceded it’ (Polkinghorne, 1991).  
 

Indeed, in his exploration of what the new mathematics has wrought in terms of our understanding of physical systems, he in passing touches upon the subject at the heart of this website: 

‘The physical systems about which I have been talking are complicated,
but they fall far short of the complexity of even the simplest living cell [] In an as yet small and imperfect way, one might hope to begin to see some chance of gaining modest insight into how the levels of physics and biology might eventually be found to interlock in their description of the world’.   

After nearly thirty years work and exploration the sheer breadth of application of fractality might be taken as indicator enough of the fundamental status of the mathematic, but an ever-increasing catalogue of phenomena visited and transformed by FGCT, it seems, will not suffice and signal achievement is now required as confirmation of the profound status of the new mathematic.  It is hoped that the model outlined here might contribute to such.   

It can readily be predicted that future science will divide around the issue of FGCT as those avoiding the use and implications of such continue to work in what must become known as the 'classical’ approach, whilst their more accepting colleagues fairly claim to be doing the science of the ‘real’.  Strategically this is anyway necessary for science to continue in questioning all assumptions.  It will, of course, be particularly schismatic for mathematics, but out of that division of the mathematical realm will emerge an infinitely more beautiful and profound 'natural mathematics' and, therein, a new, and this time 'real', enlightenment.

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The now iconographic Feigenbaum and the Mitral valve of the human heart - a mathematic of the real?

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How the chaotic input to the ventricle flows and folds to form the mitral valve


The relations of the Feigenbaum and the Mitral valve (above) are easily
analysed
by intui
tion in so far as we can understand the evolution of the latter
as emerging
out of controlling
a chaotic flow.  Imagine the component population of
objects
carried in the blood - from huge a
moeboid white cells, the smaller erythrocytes,
large protein array such as fibrinogens and massive molecules such as hormones,
through to
the fine array of circulating peptides of various sizes, e.g., penta-,
hexa-, nonapeptides,
etc., all incident upon this controlling vane.  Their differ
ent
masses, tumbling flow dynamics and 
pulse-driven arrival present a population
of objects that 
constitute as good a chaos as might be found anywhere.  Naturally,
it seems,
you best control chaos with chaos.  The valve acts as chaotic attractor
and sink, before
then acting as chaotic source or impeller to drive the flow.

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Stained cell: green - actin, red - nuclear protein

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Computer rendered 5 dimensional M Set

Would the mathematicians really choose to suggest that the new mathematics cannot describe all natural systems? 

The cell (above, left) and the M Set rendering (right) present us with more than just an apparent correlation.  At the heart of the M Set is a virtual perfect platonic sphere, similar to the nucleus of the cell, and the M Set is what happens when you place within it the Feigenbaum, the signature of chaos and disequilibrium.  Disequilibrium is everything and sets the dynamic frame for flow between source and sink.

Transcendent mathematics

History seems to have taken a strange turn in so far as the present circumstances indicate that we are returned to something like the pre-Enlightenment world and the last few centuries will come to be seen as childish prelude to what now is emerging as the new science founded in a new mathematic. 
It may well be that the mathematicians do not dare declare 'revolution' because you know that the one thing that must emerge is something new.  Perhaps they cannot face having to discover a new mathematic when it must be discovered by other means than usual and changes the mathematician's role from that of exploring the nature of number to one of seeking to understand the number of nature?

Fractal geometry is of course immensely powerful, that power deriving from the transcendence of phenomenogical realms which it allows as both conceptual device and mathematical metric, equally and, in that, is born its poetry.  Subtle, simple, beautiful and infinite are other terms that begin to find more profound meaning - as though they are not already profound enough. 

Indeed, although it is to us, to man's mind, a new mathematic, we discover of course that it is the only geometry natural creation has ever worked with or, perhaps, been worked by - at least until the advent of man.  It then becomes not a new mathematic, but a literally profound one. 

There are a lot of poetic minded scientists, some not even so minded until they took to science, and it seems they are at last to have their chance to speak.  The poetic or revelatory nature of the new science is underpinned by the fact of the iconographic signifier of the new mathematic - the Mandelbrot Set - being also, very literally, the object of our dreams (or of mine and Descartes' at least), a mathematical 'mother object' that holds - or rather itself is - the key to nature's own geometry.  The mathematical Rosetta Stone.

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Fractal scale invariance - at quantum, meso and cosmic scales - requires a transcendent mathematic


Working with paradox

Just as making the case for living systems as the purest quantum systems is a paradoxical approach, so too we can examine the larger proposal thereby entailed, which is that of this indeed being a fractal universe, by immediately moving to that extreme position, i.e., where we accept the premise of a fractal universe and see how far that thinking gets us.

If, then, we are to explore the emergence of life and, therein, man within a fractal universe, we most immediately need to establish the recurrence of pattern at many scales of length and time.  An example of just such scaled phenomenological recurrence was given on the opening page and is given above. 
We have fractal geometry of course to give us all the various measures within each phenomenal level, but for moving between levels and characterising the pattern recurrence of any particular level, we naturally require an array of scale invariant or transcendent mathematical objects or operators. 

This requirement then naturally aligns current mathematical need with that which was desired and begun by Leibniz in his identification of the natural scale invariant operators - unity (1), e and pi - as 'transcendental numbers'.  Then too, of course, he introduced the fourth transcendental operator, i, the imaginary.

The natural appearance here of Leibnizian thinking, as is in fact now necessitated by the possibility of quantum description of living systems operation, chimes with the thought again of a great arc of theory turning through the 'Enlightenment' and only now returning to where, by the accident of history, the arc began to build away from a better theoretic.  How very very different science today might have been had history accepted Leibniz as the prime mathematic visionary rather than, as things in fact played out, Newton.  There is not room enough or time here to spell out the essential shortfall of the 'Newtonian revolution' except in so far as to wonder at when teaching by exception ends and dealing with the actual begins.  Newtonian physics should always be presented with the motto 'Exactly the way the world doesn't work'.  

In the application of physics to living systems, it is certainly the approach of Leibniz that best informs.  This is beautifully and simply illustrated by comparison of the thinking of Leibniz, Einstein and Eddington on tables.  Let either of the latter sit at a table and we hear of their visions of fuzzy, fizzing quanta and atoms, the real physics they imagine underpinning the natural worked form of the wood.

To Leibniz, however, it is a 'colony of souls', in which poetic expression he voices one of the most testing of phenomena for any science, the generation of mind and, within that, self.  He poetically expresses what science still today seeks to understand and that is how the properties of 'dull matter' are by living systems working transformed such as to enable the emergence of consciousness. 

Today, by dint of fractal geometry and chaos theory, we might just as likely call Leibniz's transcendental measures 'scale invariant', which description, of itself, bespeaks a necessarily transcendent nature. 

In order, therefore, to understand the phenomena generated within such a transcendently defined universe, we expect that by working with only that which is 'given' we can still construct a mathematic that recognises the working of chaos and, like Prigogine, accepts the 'end to certainty' necessarily entailed. 

When it comes to development of the new mathematical realm we need to change our understanding of numbers beyond unity.  By this it is meant that the discrete integers or 'real' numbers are in fact no such thing, whilst the operators noted as transcendent or even imaginary in classical mathematics are the 'reals' for the new mathematic.  


HOW DID IT ALL GO SO WRONG ...?

In the immediate circumstance, it would seem that the mathematicians are themselves most to blame for having missed in 1974 the significance of the co-incident characterisation of both the fundamental metric and the dynamic natural measures that are embodied in, respectively, fractal geometry and chaos theory, and for which the Mandelbrot Set and the Feigenbaum are today iconographic.

In the longer term mathematics seems to have still not yet taken on board the relativistic reality that underpins the co-ordinate geometry of Descartes and makes obsolete the considerations of the classical mathematics of such as Russell and Whitehead in considering arithmetic and the proof required for such theoretical constructs as 1 + 1 = 2.   


The more I examine the universe and study the detail of its architecture
the more

evidence I find that the universe in some sense must have known we were coming.


Freeman Dyson quoted in Davies (1995) Are We Alone?

Quantum Life Science in a Fractal Universe

This website created 23 November 2009